Journal: Biocybernetics and Biomedical Engineering

Article Title: Fuzzy logic approach for infectious disease diagnosis: A methodical evaluation, literature and classification

doi: 10.1016/j.bbe.2019.09.004

Figure Lengend Snippet: The classification of publications for the fuzzy techniques, their research objectives, their inward and outward variables and their main conclusions.

Article Snippet: 33 , Mithra [ ] , 2018 , Tuberculosis , GFNN: Gaussian-Fuzzy-Neural network , Proposing Gaussian-Fuzzy-Neural network (GFNN) for a Tuberculosis detection. , Sputum smear microscopic image database segmentation. , Bacilli count , This proposed model has achieved a better performance with the Bacilli count..

Techniques: Biomarker Discovery, Infection, Virus, Plasmid Preparation, Comparison, Transmission Assay, Dispersion, Control, Construct, Functional Assay, Generated, Staining

Journal: Structure (London, England : 1993)

Article Title: Single-Unit Imaging of Membrane Protein-Embedded Nanodiscs from Two Oriented Sides by High-Speed Atomic Force Microscopy.

doi: 10.1016/j.str.2018.09.005

Figure Lengend Snippet: Figure 3. Fluctuation of MgtE-NDs in the End-Up Orientation, Depending on Mg2+

Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and Virus Strains BL21(DE3) Laboratory stock N/A Rosetta2(DE3) Novagen Cat# 71397 Chemicals, Peptides, and Recombinant Proteins n-dodecyl-b-D-maltopyranoside (DDM) Glycon Cat# D97002 Biotin-PEAC5-maleimide Dojindo Cat# 344-06391 MSP1D1 Laboratory stock N/A E. coli Total Lipid Extract Avanti Polar Lipids Cat# 100500 Bio-Beads SM-2 Adsorbents BIO-RAD Cat# 1528920 TEV protease Laboratory stock N/A Recombinant DNA Plasmid : Vector pTV118N Takara Shuzo Cat# 3328 Plasmid : Vector pACYCDuet-1 Novagen Cat# 71147-3 Plasmid : Vector pET-16b Daimon et al., 2017 N/A pTT610 (pTV118N-based vector) Addgene Cat# 101742 pAK24 (pACYCDuet-1-based vector) Addgene Cat# 101741 T. thermophilus mgtE RIKEN BRC Cat# JCM 10941 Software and Algorithms Kodec 4.5.7.22 (for cross-sectional analysis) Kodera et al., 2010 N/A Origin 2018 (for a graph creation and Gaussian fitting) OriginLab https://www.originlab.com/ Pymol 2.0 (to draw a model of membrane protein-embedded in nanodisc) https://www.pymol.org/ N/A IgorPro 6.36 (for high-speed AFM analysis) WaveMetrics https://www.wavemetrics.com/ Deposited Data SecYEG crystal structure Tanaka et al., 2015 PDB: 5AWW SecA-SecYEG crystal structure Zimmer et al., 2008 PDB: 3DIN Model of nanodisc including membrane scaffold proteins and lipids Mazhab-Jafari et al., 2015 PDB: 2MSC MgtE crystal structure Hattori et al., 2007 PDB: 2YVX Other Laboratory-built high-speed AFM Ando et al., 2001, 2008; Uchihashi et al., 2012 N/A

Techniques:

Journal: Structure (London, England : 1993)

Article Title: Single-Unit Imaging of Membrane Protein-Embedded Nanodiscs from Two Oriented Sides by High-Speed Atomic Force Microscopy.

doi: 10.1016/j.str.2018.09.005

Figure Lengend Snippet: Figure 4. MgtE-NDs Placed on the Mica Surface in the Side-On Orientation in the Presence and Absence of Mg2+

Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and Virus Strains BL21(DE3) Laboratory stock N/A Rosetta2(DE3) Novagen Cat# 71397 Chemicals, Peptides, and Recombinant Proteins n-dodecyl-b-D-maltopyranoside (DDM) Glycon Cat# D97002 Biotin-PEAC5-maleimide Dojindo Cat# 344-06391 MSP1D1 Laboratory stock N/A E. coli Total Lipid Extract Avanti Polar Lipids Cat# 100500 Bio-Beads SM-2 Adsorbents BIO-RAD Cat# 1528920 TEV protease Laboratory stock N/A Recombinant DNA Plasmid : Vector pTV118N Takara Shuzo Cat# 3328 Plasmid : Vector pACYCDuet-1 Novagen Cat# 71147-3 Plasmid : Vector pET-16b Daimon et al., 2017 N/A pTT610 (pTV118N-based vector) Addgene Cat# 101742 pAK24 (pACYCDuet-1-based vector) Addgene Cat# 101741 T. thermophilus mgtE RIKEN BRC Cat# JCM 10941 Software and Algorithms Kodec 4.5.7.22 (for cross-sectional analysis) Kodera et al., 2010 N/A Origin 2018 (for a graph creation and Gaussian fitting) OriginLab https://www.originlab.com/ Pymol 2.0 (to draw a model of membrane protein-embedded in nanodisc) https://www.pymol.org/ N/A IgorPro 6.36 (for high-speed AFM analysis) WaveMetrics https://www.wavemetrics.com/ Deposited Data SecYEG crystal structure Tanaka et al., 2015 PDB: 5AWW SecA-SecYEG crystal structure Zimmer et al., 2008 PDB: 3DIN Model of nanodisc including membrane scaffold proteins and lipids Mazhab-Jafari et al., 2015 PDB: 2MSC MgtE crystal structure Hattori et al., 2007 PDB: 2YVX Other Laboratory-built high-speed AFM Ando et al., 2001, 2008; Uchihashi et al., 2012 N/A

Techniques: